Expand the container to generate 3D structures of glyoproteins

Extend the container and running instructions to allow the generation of glycoproteins in batch mode. The proposed input is the following file:

[human_glycosylation_sites_rcsb_pdb_glycam_merge.csv](https://github.com/user-attachments/files/24314720/human_glycosylation_sites_rcsb_pdb_glycam_merge.csv)

A PDB file can have multiple rows that make one glycoprotein. All entries in the file with the same PDB ID (`pdb_id`) are part of one model. Each row describes one glycan (`sequence_glycam_iupac`) and its attachment site (`amino_acid_chain`, `start_pos`, `start_aa`). Where `start_pos` is the amino acid position in the protein sequence and `start_aa` the corresponding 3-letter code of the amino acid.

If a different format (e.g. JSON) is preferred, let us know.