FHIR / FHIR/sample-ig

Forcing input from user during _upgradePublisher.sh breaks CI

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Description

Hiya!

Tried running my automated pipeline after having it dormant for some time and realized that confirmation is now required before download in _updatePublisher.sh

It's specifically the line
```
read -r -p "$message" response
```
that causes problems.

It would be nice to be able to pass a flag to force the answer to the question.
Submitting a PR for this (only for the .sh as I don't have a PC to try out a .bat version)

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