New subroutine process_envxml_flags in CLMBuildNamelist.pm
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Description
Call the new subroutine from process_namelist_user_input.
So far this subroutine would just set cmip_era by taking this line
`$nl_flags->{'cmip_era'} = $envxml_ref->{'CLM_CMIP_ERA'};`
out of subroutine setup_cmdl_resolution.
Originally discussed in https://github.com/ESCOMP/CTSM/pull/3501#discussion_r2383582920
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