move calls to alt_calc and SoilBiogeochemVerticalProfile to later in the driver sequence

**Bill Sacks < sacks@ucar.edu > - 2014-12-12 16:42:00 -0700**
**Bugzilla Id:** [2107](http://bugz.cgd.ucar.edu/show_bug.cgi?id=2107)
**Bugzilla CC:** andre@ucar.edu, muszala@ucar.edu, rfisher@ucar.edu,

alt_calc and SoilBiogeochemVerticalProfile are called very early in the driver sequence. I think these should be moved later - to sometime after the dynamic subgrid stuff - since as a rule, science code should be called AFTER subgrid weights are updated. This would allow them to just operate on the active filters, rather than the active_and_inactive filters.

This is connected to bug 1668, but I don't know which depends on which.