Update path for cime Tools

Like other externals the path for cime tools should be updated from cime/scripts/Tools to cime/CIME/Tools. It does seem to build and run even with this issue...

```
cime_config/buildexe:sys.path.append(os.path.join(_CIMEROOT, "scripts", "Tools"))
cime_config/buildnml:sys.path.append(os.path.join(_CIMEROOT, "scripts", "Tools"))
cime_config/config_component.xml: $CIMEROOT/scripts/Tools
cime_config/config_component.xml: Scripts root utils directory location (setup automatically to $CIMEROOT/scripts/Tools - DO NOT EDIT)
cime_config/runseq/runseq_D.py:sys.path.append(os.path.join(_CIMEROOT, "scripts", "Tools"))
cime_config/runseq/runseq_TG.py:sys.path.append(os.path.join(_CIMEROOT, "scripts", "Tools"))
cime_config/runseq/runseq_general.py:sys.path.append(os.path.join(_CIMEROOT, "scripts", "Tools"))
```