DiamondLightSource

DiamondLightSource/python-murfey

Client-Server architecture hauling Cryo-EM data around systems

Stars: 2
Forks: 1
Open beginner issues: 0
Indexed issues: 34
Avg merge: 1d 10h
Merged PRs (30d): 19

Dominant language: Python
License: BSD-3-Clause
Last GitHub push: Sep 11, 2026
Latest indexed: Sep 15, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed

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34 issues indexed so far

Add a time API call to get current server time Open

DiamondLightSource/python-murfey#56 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Show pixel size in Angstroms Open

DiamondLightSource/python-murfey#111 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Configurable processing and processing parameters Open

DiamondLightSource/python-murfey#151 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add more tests for server side Open

DiamondLightSource/python-murfey#195 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Register processing parameters to provide users with more detail Open

DiamondLightSource/python-murfey#199 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add option to disable alertmanager monitoring Open

DiamondLightSource/python-murfey#200 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Record dose for each movie as measured during acquisition Open

DiamondLightSource/python-murfey#213 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Better handling of ISPyB lookup of session ID failure needed Open

DiamondLightSource/python-murfey#229 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Record position tracking data in ISPyB tables Open

position tracking

DiamondLightSource/python-murfey#234 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Develop unit tests for API endpoints Open

DiamondLightSource/python-murfey#235 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
When destinations are explicitly added for existing sources they should be created Open

DiamondLightSource/python-murfey#236 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Coordination of different rsync threads Open

DiamondLightSource/python-murfey#251 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Murfey for CryoCLEM Open

cryo-clem enhancement

DiamondLightSource/python-murfey#288 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Remove the tilt offset parameter for tomography Open

DiamondLightSource/python-murfey#347 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Handle instrument server post failures Open

DiamondLightSource/python-murfey#348 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Refactor SQL tables, API endpoints, and feedback-callback function into submodules Open

enhancement

DiamondLightSource/python-murfey#375 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Murfey server still looks for security configuration file path from environment variable instead of machine configuration Open

bug server

DiamondLightSource/python-murfey#397 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
RSync URL for instrument server setup Open

DiamondLightSource/python-murfey#474 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Murfey validates ALL MachineConfigs in the MachineConfig file Open

bug server

DiamondLightSource/python-murfey#488 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add MachineConfig key to set whether and how permissions are modified when transferring files via rsync Open

enhancement

DiamondLightSource/python-murfey#489 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Finalising all rsyncers through the instrument server seems to cause connection issues with the database Open

bug web ui

DiamondLightSource/python-murfey#530 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
No logic to handle case where no microscope image is provided for the frontend Open

bug server web ui

DiamondLightSource/python-murfey#551 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
The "allow_removal" MachineConfig key doesn't work Open

client

DiamondLightSource/python-murfey#562 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Cleaner rsync still submits messages to server Open

bug client

DiamondLightSource/python-murfey#580 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
The cleanup function doesn't fully wipe the database of entries related to that particular session Open

bug server

DiamondLightSource/python-murfey#581 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
API endpoints in "murfey.server.api.spa" might be vestigial and can be removed Open

DiamondLightSource/python-murfey#596 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Spaces in file paths still cause problems Open

DiamondLightSource/python-murfey#619 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add logic to automate XRM data transfer and processing workflow Open

client enhancement server xrm

DiamondLightSource/python-murfey#627 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add analyser and context logic for XRM workflow Open

DiamondLightSource/python-murfey#628 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add database tables to store XRM workflow metadata as needed Open

DiamondLightSource/python-murfey#629 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add server-side endpoints to handle processing of XRM files Open

DiamondLightSource/python-murfey#630 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
CrYOLO model path caching means changes are not detected during collection Open

DiamondLightSource/python-murfey#646 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Rsyncers don't start correctly on reconnect Open

DiamondLightSource/python-murfey#791 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Restructure the data collection group tags to use the rsyncer table Open

DiamondLightSource/python-murfey#792 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026

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