DiamondLightSource / DiamondLightSource/SuRVoS
Loading datasets without copying them
- Dominant language
- Cuda
- Stars
- 25
- Forks
- 5
- PR merge metrics
- No merged PRs in 30d
Description
Hi, I am currently using SuRVoS with a big dataset and I was wondering if there is a way to prepare the dataset (name it data.h5, place it in a dedicated folder, name the internal dataset '/data') and on the SuRVoS menu select load the dataset instead of opening it.
I would like to do that as my dataset is 57GB and loading it to memory (RAM) in order to make a copy is not an option. I know SuRVoS make a copy of the input dataset because it normalizes it. However, I don't want to normalize my dataset or at least I would like to have the option not to.
I know SuRVoS was not designed for big datasets, but I am planning to process my dataset region by region and my only obstacle is that SuRVoS has to load it as a whole at the beginning. I hope this change is easily applicable as it would allow people to use SuRVoS for big datasets.
Aha! Link: https://dls1.aha.io/features/D-28
Contributor guide
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Research direction
No files, tests, or entry points are named. Start by tracing the existing dataset-loading and normalization flow; done would mean an optional way to process a 57GB dataset without copying it into memory or normalizing it, including region-by-region processing.
Written by the indexing model from the issue text.
Assessment
- Domain
- data
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 25/100