DiamondLightSource / DiamondLightSource/SuRVoS

Loading datasets without copying them

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#48 3 comments 0 reactions 0 assignees View on GitHub
Dominant language
Cuda
Stars
25
Forks
5
PR merge metrics
No merged PRs in 30d

Description

Hi, I am currently using SuRVoS with a big dataset and I was wondering if there is a way to prepare the dataset (name it data.h5, place it in a dedicated folder, name the internal dataset '/data') and on the SuRVoS menu select load the dataset instead of opening it.

I would like to do that as my dataset is 57GB and loading it to memory (RAM) in order to make a copy is not an option. I know SuRVoS make a copy of the input dataset because it normalizes it. However, I don't want to normalize my dataset or at least I would like to have the option not to.

I know SuRVoS was not designed for big datasets, but I am planning to process my dataset region by region and my only obstacle is that SuRVoS has to load it as a whole at the beginning. I hope this change is easily applicable as it would allow people to use SuRVoS for big datasets.

Aha! Link: https://dls1.aha.io/features/D-28

Contributor guide

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Research direction

No files, tests, or entry points are named. Start by tracing the existing dataset-loading and normalization flow; done would mean an optional way to process a 57GB dataset without copying it into memory or normalizing it, including region-by-region processing.

Written by the indexing model from the issue text.

Assessment

Domain
data
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
25/100

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