single-stranded index hopping warnings
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Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 3
- Forks
- 0
- PR merge metrics
- No merged PRs in 30d
Description
For single-stranded sequencing runs, warn if index hopping within the pooled wells can produce real library index combinations.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue does not name a file, test, or entry point. Start by locating the Python code that handles single-stranded sequencing runs and pooled-well index validation, then inspect existing warning tests or patterns. Done means runs with index combinations that can result from index hopping produce a warning, while unaffected runs do not.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100