DReichLab / DReichLab/waldo

Publications by DataInstance instead of GeneticAnalysis

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Dominant language
Python
Stars
3
Forks
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Description

If all genetic analyses based on the same data files (bams/crams) are considered published, then publishing should be by data instance.

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by tracing the publication logic and the model or entry points for GeneticAnalysis and DataInstance; the issue provides no file or test names. Confirm how analyses sharing the same BAM/CRAM data files are grouped, then verify that publication status is determined per DataInstance rather than per GeneticAnalysis.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
backend
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Quiet
Clarity
Mostly clear
Newbie friendliness
45/100

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