DReichLab / DReichLab/waldo

Publication for temporarily anonymized samples

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Dominant language
Python
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Description

For samples that are published without metadata in one paper (Akbari et al), we need an additional property of the sample-publication record that indicates it's not fully published.

We need to decide how to display, including:

  1. What is the "first" publication? With meta data only? Paper with first date regardless of meta data?
  2. What goes in anno file publication column?

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  3. Fork the repository and make your change on a branch.
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Research direction

Start by reviewing the sample-publication record and the anno file's publication column, then resolve how temporarily anonymized Akbari et al. samples should be represented. Define which publication counts as the first and how incomplete metadata is displayed. Done means the property, display behavior, and anno-file value are agreed and documented in the relevant implementation or tests.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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