DReichLab / DReichLab/waldo

Relationships in annotation

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Dominant language
Python
Stars
3
Forks
0
PR merge metrics
No merged PRs in 30d

Description

Each relationship should only show up once. Possibilities to implement are to allow only one unique family relationship for each pair of individuals (samples) with method combination.

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by locating the annotation code that creates relationships between individual samples and inspect how relationship methods are combined. Confirm the expected uniqueness rule for each sample pair and method combination, then add or update tests to verify that duplicate relationships appear only once.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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