DReichLab / DReichLab/waldo

Unique FluidX barcodes across lysates and libraries

Open
#249 0 comments 0 reactions 0 assignees View on GitHub

Nobody has claimed this yet.

Dominant language
Python
Stars
3
Forks
0
PR merge metrics
No merged PRs in 30d

Description

Depends first on #246 and #248. The FluidX barcodes for lysates are checked to be unique, and those for libraries are also checked to be unique. Ideal is to also check that barcodes across lysates and libraries are unique.

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reading issues #246 and #248, which this work depends on, and locate the existing checks that enforce uniqueness for lysate and library FluidX barcodes. Extend the validation to compare both groups, then run the relevant existing validation tests and confirm that duplicates across the two groups are rejected.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
backend
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
45/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.