DReichLab / DReichLab/waldo

STAR methods

Open
#102 0 comments 0 reactions 1 assignee View on GitHub

@MatthewMah is already working on this.

Since Oct 11, 2022.

enhancement
Dominant language
Python
Stars
3
Forks
0
PR merge metrics
No merged PRs in 30d

Description

Some journals such as Cell ask the authors to publish the reagents and kits (as well as analysis tools) that were used to generate and analyze the published data in order for others to replicate the results.
Here is a link as example:
https://www.cell.com/action/showFullTableHTML?isHtml=true&tableId=undtbl1&pii=S0092-8674%2822%2900267-7

I believe that more and more journals will adapt this and I will be asked more frequently to fill this out, so I was wondering if we could add this information to Waldo.
This is not urgent; I know there are more urgent issues that are more important to work on before this one.

These chemicals and kits are tied to the respective protocol versions, so I think adding this information should be straightforward and I can start making a list; and you could consider to also add software and tools used for the sequence analysis pipeline.
The output for Aisling or the author would be a list of single entries compiled from all libraries in the manuscript, so if a certain chemical such as water was used for Library prep and Twist capture by many libraries, it would only be listed ones.

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.