Question about an error using smartpca
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- Dominant language
- C
- Stars
- 207
- Forks
- 61
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Description
I used the tool for Principal Component Analysis on GWAS using the 70000 genome data as follows .
(I used plink formatted file called .bed, .bim, .fam and total number of samples I used is 72999.)
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Make par file
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Execute Command line
EIG-6.1.4/bin/smartpca -p test.par
But there was an error like this.
So I'd like to know how to solve this error.
We hope to hear from you soon.
Sincerely
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the attached smartpca parameter settings and the command using the PLINK .bed, .bim, and .fam files. Reproduce the run with the stated sample count and obtain the exact error text from the screenshots. Done means identifying the cause and documenting a verified resolution.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- c
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100