smartpca output description
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- Dominant language
- C
- Stars
- 207
- Forks
- 61
- PR merge metrics
- No merged PRs in 30d
Description
I'm trying to get as much useful information as I can. But I find that there is rare information about the output of smartpca.
Could you please explain these sectors?
1.
kurtosis snps indivs
eigenvector 1 19.748 8.548
eigenvector 2 10.372 1.793
eigenvector 3 11.369 2.928
eigenvector 4 14.368 5.535
eigenvector 5 14.923 5.712
eigenvector 6 11.614 2.647
eigbestsnp 1 NW_005392842.1_342309 1 3475 7.095
eigbestsnp 1 NW_005392842.1_1092099 1 3629 7.095
eigbestsnp 1 NW_005392842.1_1092105 1 3630 7.095
eigbestsnp 1 NW_005392858.1_844626 1 7110 7.095
eigbestsnp 1 NW_005392858.1_917105 1 7157 7.095
eigbestsnp 1 NW_005392858.1_1019387 1 7194 7.095
eigbestsnp 1 NW_005392872.1_2150841 1 9626 7.095
total number of snps killed in pass: 504962 used: 199335
number of samples used: 15 number of snps used: 704297
nodata: NW_005404811.1_267
nodata: NW_005404830.1_2218
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue identifies smartpca output sections but names no source file, test, or entry point to inspect. Start by locating the code or existing documentation that produces these messages, then document the meaning of each listed field and status line with enough context to interpret the example output.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- c
- Domain
- documentation
- Issue type
- Documentation
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100