ID too long
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- Dominant language
- C
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Description
Hi,
I have added "familynames: NO" to the par file and ran smartpca -p file.par but continue to get the ID too long error. The output for smartpca is below. Thanks!
Rose
parameter file: casescontrols20180516_prune.pca.par
THE INPUT PARAMETERS
##PARAMETER NAME: VALUE
genotypename: casescontrols20180516_prune.ped
snpname: casescontrols20180516_prune.map
indivname: casescontrols20180516_prune.ped
evecoutname: casescontrols20180516_prune.pca.evec
evaloutname: casescontrols20180516_prune.eval
altnormstyle: NO
numoutevec: 10
numoutlieriter: 5
numoutlierevec: 10
outliersigmathresh: 6
qtmode: NO
familynames: NO
smartpca version: 16000
norm used
fatalx:
ID too long
Aborted (core dumped)
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Research direction
Start by reproducing the failure with smartpca and the supplied casescontrols20180516_prune.pca.par, .ped, and .map files. Trace how smartpca reads individual IDs and enforces the length limit; the issue is complete when the cause is identified and the error is fixed or the required input constraint is documented.
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Assessment
- Tech stack
- c
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100