DReichLab / DReichLab/EIG

(getpedgenos) all.filter.ped bad geno *

Open
#101 1 comment 0 reactions 0 assignees View on GitHub

Nobody has claimed this yet.

Dominant language
C
Stars
207
Forks
61
PR merge metrics
No merged PRs in 30d

Description

Hi there,

I got the error below after running convertf -p transfer.conf

image

Here is my parameter file
image

my .ped file looks like
image

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reproducing the reported convertf failure using the transfer.conf parameter file and the .ped input shown in the issue. Trace the getpedgenos path to determine why the genotype is rejected; done means the cause is identified and the input is either accepted or the failure is reported clearly.

Written by the indexing model from the issue text.

Assessment

Tech stack
c
Domain
bioinformatics
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.