DOI-USGS / DOI-USGS/streamMetabolizer
Non-Zero Exit Status
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Description
Having current trouble downloading to R version 4.1.2.
> remotes::install_github('streampulse/StreamPULSE', dependencies = TRUE)
Downloading GitHub repo streampulse/StreamPULSE@HEAD
✓ checking for file ‘/private/var/folders/nr/c9hld8nn2cd9g3_m36t99j980000gn/T/RtmpE898qS/remotesb10b2c50d67a/streampulse-StreamPULSE-cafe58c/DESCRIPTION’ ...
─ preparing ‘StreamPULSE’:
✓ checking DESCRIPTION meta-information ...
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
Omitted ‘LazyData’ from DESCRIPTION
─ building ‘StreamPULSE_0.0.0.9043.tar.gz’
* installing *source* package ‘StreamPULSE’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Error: package or namespace load failed for ‘Cairo’:
.onLoad failed in loadNamespace() for 'Cairo', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Cairo/libs/Cairo.so':
dlopen(/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Cairo/libs/Cairo.so, 0x0006): Library not loaded: /opt/X11/lib/libxcb-shm.0.dylib
Referenced from: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/Cairo/libs/Cairo.so
Reason: tried: '/opt/X11/lib/libxcb-shm.0.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libxcb-shm.0.dylib' (no such file), '/Library/Java/JavaVirtualMachines/jdk1.8.0_241.jdk/Contents/Home/jre/lib/server/libxcb-shm.0.dylib' (no such file)
Execution halted
ERROR: lazy loading failed for package ‘StreamPULSE’
* removing ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/StreamPULSE’
Warning message:
In i.p(...) :
installation of package ‘/var/folders/nr/c9hld8nn2cd9g3_m36t99j980000gn/T//RtmpE898qS/fileb10b6f30fa50/StreamPULSE_0.0.0.9043.tar.gz’ had non-zero exit status
>
> # Install latest version of streamMetabolizer.
> install.packages('streamMetabolizer', dependencies=TRUE,
+ repos=c('https://owi.usgs.gov/R','https://cran.rstudio.com'))
Warning in install.packages :
package ‘streamMetabolizer’ is not available for this version of R
A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
Warning in install.packages :
unable to access index for repository https://owi.usgs.gov/R/bin/macosx/contrib/4.1:
cannot open URL 'https://owi.usgs.gov/R/bin/macosx/contrib/4.1/PACKAGES'
>
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