ComputationalPsychiatry / ComputationalPsychiatry/PhysIO
BIDSApp ready automatic read-in of all PhysIO scan_timing parameters from .json files
Nobody has claimed this yet.
- Dominant language
- MATLAB
- Stars
- 14
- Forks
- 2
- PR merge metrics
- No merged PRs in 30d
Description
Typical Scan timing parameters like
- TR
- nVolumes
- nSlices
could be read in from Physio or fMRI .json side car files, requiring no manual intervention. This has been nicely implemented in
Valevicius, D., Beck, N., Kasper, L., Boroday, S., Bayer, J., Rioux, P., Caron, B., Adalat, R., Evans, A.C., Khalili-Mahani, N., 2023. Web-based processing of physiological noise in fMRI: addition of the PhysIO toolbox to CBRAIN. Frontiers in Neuroinformatics 17. https://doi.org/10.3389/fninf.2023.1251023
but could also be natively available in PhysIO
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No file or test is named. Start by tracing how PhysIO receives scan_timing parameters and compare that flow with the cited CBRAIN implementation; done means TR, nVolumes, and nSlices can be read from PhysIO or fMRI JSON sidecars without manual intervention.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- matlab
- Domain
- data
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 52/100