BioPandas / BioPandas/biopandas

Adding possibility for a collection of structures

Open
#142 1 comment 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
756
Forks
119
Avg merge
23h 8m
Merged PRs (30d)
2

Description

#### Describe the workflow you want to enable
I would like to be able to load structures from different sources, into a collection (stack) and make it easier to apply different functions (calculations, filtering) for all the structures at the same time.

#### Describe your proposed solution
I have implemented a stack solution here, will move it to be properly part of the package if approved.
https://colab.research.google.com/drive/1a54jnLzzNUYoLBcwweHdbrjIqEKUJtVP#scrollTo=lOspp7m91ve4

Contributor guide

Open the contributing guide

Research direction

Start by reviewing the linked Google Colab, which contains the proposed stack implementation; the issue does not name a package file, entry point, or test. Done would mean an approved collection API can load structures from different sources and apply calculations or filtering across them, with the relevant behavior covered by tests.

Written by the indexing model from the issue text.

Assessment

Tech stack
pandas, python
Domain
bioinformatics, data
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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