replicate.sh fragility in checking that init scripts are properly installed

replicate.sh does a check (via md5) to see if the scripts installed in /etc/init,d match the ones in the HA directory
```
do
NEWMD5=$(md5sum $APPD_ROOT/HA/$s.sh | cut -d " " -f 1)
if [[ "$NEWMD5" != `$ssh $host md5sum /etc/init.d/$s|cut -d " " -f 1` ]] ; then
((errors++))
fi
done
```
When using custom init scripts (not using install-init.sh) this check fails.
The fix is to copy the custom /etc/init.d scripts to the HA directory with their proper names

*NOTE this kind of functionality may be resolved through use of "install-init.sh" with the "-u" option, but the sequence and proper steps are not clear from looking at that code.