Proprietario
AllenNeuralDynamics
236 repository indicizzati · Vedi su GitHub
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aind-ephys-pipeline
AIND pipeline for processing extracellular electrophysiology data
Nextflow · 41 stelle
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aind-data-schema
A library that defines AIND data schema and validates JSON.
Python · 34 stelle
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openscope-community-predictive-processing
This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Proce...
Python · 26 stelle
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aind-ephys-spikesort-kilosort25-full
CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
Python · 14 stelle
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aind-large-scale-cellpose
Large-scale cell segmentation with cellpose.
Python · 10 stelle
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Rhapso
An open-source Python toolkit for large-scale fluorescence microscopy data alignment and fusion.
Python · 9 stelle
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dynamic-foraging-task
Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control
Python · 7 stelle
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aind-smartspim-pipeline
Repository that hosts the SmartSPIM pipeline code
Nextflow · 6 stelle
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TigerASI
a lightweight python interface for ASI brand Tiger Controllers
Python · 5 stelle
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wavpack-numcodecs
Numcodecs implementation of the WavPack audio codec
C · 5 stelle
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anivia
Fork of VGG VIA to better support annotation of animal pose images
JavaScript · 4 stelle
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harp.device.treadmill-driver
0326: a Harp-compatible device for controlling an instrumented mouse treadmill
Jupyter Notebook · 4 stelle
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voxel-classic
General purpose microscope control repository
Python · 4 stelle
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view
Model/View for exa-spim
Python · 4 stelle
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harp.device.lickety-split
0360: an ephys-compliant capacitive lick detector
C++ · 4 stelle
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runze-control
Python Driver for Aurora Pro Scientific (aka Runze Fluid) syringe pumps
Python · 4 stelle
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parallax
Automatic detection of probe position from multiple camera views
Python · 4 stelle
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aind-SmartSPIM-segmentation
segmentation module for SmartSPIM cloud pipeline
Python · 4 stelle
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aind-smartspim-stitch
Stitching and fusion pipeline in the cloud
Python · 4 stelle
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aind-smartspim-ccf-registration
Registration of lightsheet whole brain images to the Allen CCF V3 Atlas
Python · 4 stelle
- 216 altri repository si trovano su Vedi su GitHub
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Analysis
AllenNeuralDynamics/aind_data_outreach#58 · 2 commenti · 0 reazioni · 1 assegnatario ·
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Write Data Platform paper Apertapaper
AllenNeuralDynamics/aind_data_outreach#69 · 1 commento · 0 reazioni · 2 assegnatari ·
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Write Metadata schema paper Apertapaper
AllenNeuralDynamics/aind_data_outreach#70 · 2 commenti · 0 reazioni · 2 assegnatari ·
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AllenNeuralDynamics/aind_data_outreach#73 · 1 commento · 0 reazioni · 1 assegnatario ·
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CO R user experience support ApertaAnalysis
AllenNeuralDynamics/aind_data_outreach#77 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#78 · 4 commenti · 0 reazioni · 3 assegnatari ·
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documentation SWDB Workshop
AllenNeuralDynamics/aind_data_outreach#79 · 1 commento · 0 reazioni · 1 assegnatario ·
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Analysis
AllenNeuralDynamics/aind_data_outreach#87 · 2 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind-metadata-queries#5 · 2 commenti · 0 reazioni · 0 assegnatari ·
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AllenNeuralDynamics/aind-metadata-queries#6 · 1 commento · 0 reazioni · 0 assegnatari ·
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AllenNeuralDynamics/aind-metadata-queries#7 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenNeuralDynamics/aind-metadata-queries#9 · 0 commenti · 0 reazioni · 1 assegnatario ·
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pin abc_atlas_access version Aperta
AllenNeuralDynamics/abc-merfish-analysis#1 · 0 commenti · 0 reazioni · 1 assegnatario ·
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Analysis
AllenNeuralDynamics/aind_data_outreach#109 · 1 commento · 0 reazioni · 1 assegnatario ·
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NWB for slice physiology Aperta
AllenNeuralDynamics/aind_data_outreach#116 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#122 · 0 commenti · 0 reazioni · 0 assegnatari ·
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SWDB
AllenNeuralDynamics/aind_data_outreach#128 · 2 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#129 · 1 commento · 0 reazioni · 1 assegnatario ·
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Website
AllenNeuralDynamics/aind_data_outreach#182 · 0 commenti · 0 reazioni · 2 assegnatari ·
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Website
AllenNeuralDynamics/aind_data_outreach#183 · 1 commento · 0 reazioni · 2 assegnatari ·
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Protocols
AllenNeuralDynamics/aind_data_outreach#201 · 1 commento · 0 reazioni · 1 assegnatario ·
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Protocols
AllenNeuralDynamics/aind_data_outreach#211 · 0 commenti · 0 reazioni · 2 assegnatari ·
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Protocols
AllenNeuralDynamics/aind_data_outreach#209 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#194 · 0 commenti · 0 reazioni · 1 assegnatario ·
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internal support
AllenNeuralDynamics/aind_data_outreach#195 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#199 · 3 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#214 · 0 commenti · 0 reazioni · 1 assegnatario ·
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internal support Metadata
AllenNeuralDynamics/aind_data_outreach#215 · 0 commenti · 0 reazioni · 1 assegnatario ·
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Upgrade NP Ultra rig ApertaMetadata
AllenNeuralDynamics/aind_data_outreach#216 · 1 commento · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#239 · 3 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#248 · 3 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#249 · 1 commento · 0 reazioni · 1 assegnatario ·
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CO syncing github action Aperta
AllenNeuralDynamics/aind_data_outreach#251 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#259 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#261 · 2 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#263 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#264 · 2 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#265 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#272 · 7 commenti · 0 reazioni · 2 assegnatari ·
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AllenNeuralDynamics/aind_data_outreach#279 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#282 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#283 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#285 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#286 · 0 commenti · 0 reazioni · 1 assegnatario ·
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support exaspim QC Aperta
AllenNeuralDynamics/aind_data_outreach#290 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#291 · 0 commenti · 0 reazioni · 1 assegnatario ·
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Confocal imaging ingest ApertaMetadata
AllenNeuralDynamics/aind_data_outreach#292 · 0 commenti · 0 reazioni · 1 assegnatario ·
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Protocols
AllenNeuralDynamics/aind_data_outreach#295 · 0 commenti · 0 reazioni · 1 assegnatario ·
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Respiration data challenge Aperta
AllenNeuralDynamics/aind_data_outreach#297 · 1 commento · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind_data_outreach#302 · 0 commenti · 0 reazioni · 1 assegnatario ·