AllenNeuralDynamics

AllenNeuralDynamics/aind-smartspim-pipeline

Repository that hosts the SmartSPIM pipeline code

Stars: 6
Forks: 3
Open beginner issues: 0
Indexed issues: 3

Dominant language: Nextflow
License: MIT
Last GitHub push: Aug 12, 2026
Latest indexed: Sep 13, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Open All

3 issues indexed so far

Stitching multiple channels Open

AllenNeuralDynamics/aind-smartspim-pipeline#10 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Mathew and Nick discuss issues with current (wrong CCF points) and historic (need to be reprocessed with name change) for SmartSPIM paper brains Open

AllenNeuralDynamics/aind-smartspim-pipeline#18 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Sharmi make a meeting with David and Mike about automatic deletions Open

AllenNeuralDynamics/aind-smartspim-pipeline#19 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

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