AllenNeuralDynamics / AllenNeuralDynamics/aind-ephys-pipeline

Machine readable NextFlow logs?

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Lenguaje dominante
Nextflow
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41
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10
Merge medio
25 min
PR fusionados (30 d)
2

Descripción

I'm looking to make a common issues table for https://dandi-compute.github.io/aind-page/ to make it easier to know what to prioritize in terms of fixes

While I can attempt to parse raw text from the log files for this purpose, it might be easier if NextFlow/SpikeInterface had a more machine-readable format style for error catching, such as JSON/YAML/etc.

Example for inspiration: [BIDS Validator](https://bids-validator.readthedocs.io/en/latest/user_guide/command-line.html#usage)

When run with `--json` flag can produce output like: https://github.com/bids-dandisets/001371/blob/draft/derivatives/validations/bids_validation.json

Instead of the default human-readable text: https://github.com/bids-dandisets/001371/blob/draft/derivatives/validations/bids_validation.txt

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