AllenInstitute / AllenInstitute/bmtk
Install run_bionet.py etc as commandline utils
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- Dominant language
- Python
- Stars
- 335
- Forks
- 102
- Avg merge
- 1d 5h
- Merged PRs (30d)
- 6
Description
It's just a suggestion, but wouldn't it make sense to install run_bionet.py, run_popnet.py etc as commandline tools when pip installing bmtk ? (Or maybe wrap everything in one commandline tool ('bmtk' ?), with 'popnet' / 'bionet' etc has argument.
As far as I can see these scripts get reused a lot without modification, and always have to be present in the project directories ? Being able to have them available immediately would make things easier.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing run_bionet.py and run_popnet.py and how pip installation currently handles them. Decide whether separate command-line utilities or one bmtk command is appropriate, then verify that the chosen commands are available after installation without requiring copies in project directories.
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Assessment
- Tech stack
- python
- Domain
- cli
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100