AllenInstitute / AllenInstitute/AllenSDK
Make behavior movie path available to session object
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Nobody has claimed this yet.
behavior
braintv
- Dominant language
- Jupyter Notebook
- Stars
- 398
- Forks
- 163
- PR merge metrics
- No merged PRs in 30d
Description
Behavior movies are tracked in LIMS as well known files with type "RawBehaviorTrackingVideo". Need to make these paths accessible in the metadata attached to Ophys session objects. Perhaps using something like the BehaviorOphysLimsApi .
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Locate BehaviorOphysLimsApi and the code that constructs metadata for ophys session objects. Trace how LIMS well-known files are queried, focusing on files with type "RawBehaviorTrackingVideo". Done means those behavior movie paths are accessible from the session metadata, with coverage for the new metadata.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- backend-api-design, bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100