AllenInstitute / AllenInstitute/AllenSDK
Add nwbwidget plot method to session object
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braintv
NWB
- Dominant language
- Jupyter Notebook
- Stars
- 398
- Forks
- 163
- PR merge metrics
- No merged PRs in 30d
Description
At the 2019 Janelia hackathon @thewtex demoed the nwb jupyter widgets package
This issue tracks adding support for visualizing a behavior ophys session with this tool.
- Add visualize() method that uses this something like this:
from nwbwidgets import nwb2widget
import pynwb
io = pynwb.NWBHDF5IO(path, 'r')
nwb = io.read()
nwb2widget(nwb)
to create a visualization of the session
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the session object and reviewing the nwbwidgets nwb2widget example shown in the issue. Determine where a visualize() method belongs and how a behavior ophys session is passed to the widget; done means the method produces a session visualization. No file or test is identified, so the relevant entry point and validation approach need to be established first.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter, python
- Domain
- data-visualization
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100