AllenInstitute / AllenInstitute/AllenSDK
BrainObservatoryCache.get_ophys_experiments returns experiments that do not contain requested cell
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braintv
bug
- Dominant language
- Jupyter Notebook
- Stars
- 398
- Forks
- 163
- PR merge metrics
- No merged PRs in 30d
Description
When you call:
BrainObservatoryCache.get_ophys_experiments(cell_specimen_ids=[cell_specimen_id], stimuli=['locally_sparse_noise'])
It can return experiments that do not contain the cell if the cell is present in the container but not the requested session.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start at BrainObservatoryCache.get_ophys_experiments and reproduce the call with a cell_specimen_id and locally_sparse_noise. Trace how cell membership is filtered relative to the requested session, then verify that returned experiments contain the requested cell and stimulus.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100