MTrain Upgrade/datafix: dis... | AllenInstitute/AllenSDK

Nobody has claimed this yet.

The issue names mtrain_api, visual_behavior_analysis, allensdk, and the mtrain_regimen YAML files, but no specific source files or tests. Start by mapping the dependency, ORM, deployment, migration, and ETL checklist items across those components. Done means completing the listed schema and data changes, dependency and version releases, and blue/green deployments.

Written by the indexing model from the issue text.

While round-tripping the extended_data_frame out of the MTrain webservice, I discovered that the column "distribution_mean" on the trials table in the database has a datatype that is improperly set (currently is int, should be float).

Correcting this bug will require:

Refactor dependencies out of visual_behavior_analysis
- Release visual_behavior_analysis 0.6.1
- Move to allensdk 1.0.0.dev8 and release to artifactory
An upgrade to the MTrain Service
- Patch mtrain_api
  - Change ORM: distribution_mean
  - Change ORM: reward_lick_count
  - Upgrade dependency visual_behavior 0.3.0 --> 0.6.1
  - bumpversion: 0.3.0.dev0 --> 0.3.1
- Deploy 0.3.1 to green for staging
A database migration datafix on the these columns
- schema change trials/distribution_mean int --> float
- schema change trials/reward_lick_count float --> int
- data ETL from the mtrain_regimen yaml files to population the column
Transfer 0.3.1 to blue

MTrain Upgrade/datafix: distribution_mean and reward_lick_count

Assessment

Research direction

Description

Contributor guide

First steps

More from AllenInstitute/AllenSDK

Similar issues