AllenInstitute / AllenInstitute/AllenSDK
Mesoscope informatics
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behavior
braintv
Epic
ophys
- Dominant language
- Jupyter Notebook
- Stars
- 398
- Forks
- 163
- PR merge metrics
- No merged PRs in 30d
Description
Work to support Mesoscope pipeline for Visual Behavior
- Implement crosstalk demixing module
- Temporal alignment and sync
- NWB changes due to Mesoscope-specific timing
- NWB changes for treating separate planes as groups of cells
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by mapping the Mesoscope pipeline for Visual Behavior and locating the existing crosstalk demixing, temporal alignment, synchronization, and NWB handling entry points. The work is done when Mesoscope timing and separate-plane cell groups are supported across the pipeline and each checklist item has corresponding validation.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100