AllenInstitute / AllenInstitute/ACE

Panel improvements: ‘Explore an individual annotation”

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Dominant language
R
Stars
4
Forks
1
PR merge metrics
No merged PRs in 30d

Description

Low priority fix

  • Improved color-coding. Allow more general coloring, rather than requiring a specific “direction” column in the input.
  • How to define up/down with AD (we used abundance as discussed in teach paper)? Right now we also just require a direction field, but could consider a quantitative metric of effect size, multiple columns, etc. if that makes more sense. Tain is actually rerunning the analysis: color-coding by numeric effect size instead of categorical?

Completed

  • Always show annotation value on left. Then have consistent ordering of table and chart.
  • It would also be great if the color palette was consistent (e.g. when there is only 2 levels then the "No change" becomes red vs green). RELATED: Fix the color issue on the ACE app with the up/down/none calls. Can hard-code as factors.

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by locating the individual-annotation panel and the input handling for direction and effect-size fields. Review how categorical colors are assigned, then clarify the intended numeric or multi-column rule with maintainers. Done means the panel supports the agreed coloring and up/down behavior without requiring a specific direction column.

Written by the indexing model from the issue text.

Assessment

Tech stack
r
Domain
data-visualization, frontend
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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