Owner

AllenCell

20 indexierte Repositories · Auf GitHub ansehen

• vole-core

  core rendering canvas and data loading services for Vol-E volume viewer

  TypeScript · 106 Sterne

• agave

  High quality visualization for volumetric image data

  C++ · 62 Sterne

• aics-ml-segmentation

  Python · 32 Sterne

• cyto-dl

  Python · 32 Sterne

• aics-segmentation

  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow

  Jupyter Notebook · 26 Sterne

• cvapipe_analysis

  Analysis of data produced by cvapipe for the variance paper

  Jupyter Notebook · 24 Sterne

• aics-shparam

  Python · 24 Sterne

• napari-allencell-segmenter

  A plugin that enables image segmentation provided by Allen Institute for Cell Science

  Python · 20 Sterne

• segmenter_model_zoo

  scripts and API for running Deep Learning models from segmenter

  Jupyter Notebook · 10 Sterne

• aics-cytoparam

  Python · 7 Sterne

• benchmarking_representations

  Benchmarking different methods for extracting unsupervised representations from images

  Python · 7 Sterne

• allencell-segmenter-ml

  Napari plugin for ml segmentation

  Python · 5 Sterne

• endothelial-pipeline

  Dynamics of ML-based morphological features indicate a shear stress-dependent bifurcation of hiPSC-derived endothelial cell states

  Python · 2 Sterne

• cell-feature-explorer

  Plot and explore data that is linked to images, with an embedded viewer

  TypeScript · 2 Sterne

• EMT_data_analysis

  This repo contains code for EMT deliverable data analysis and has dependencies associated with output from EMT_image_analysis repo.

  Python · 1 Stern

• nuc-morph-analysis

  Python · 0 Sterne

• camera-alignment-core

  Core algorithms for alignment of two-camera microscopy imagery

  Python · 0 Sterne

• cellpack-client

  Frontend interface for cellPACK

  TypeScript · 0 Sterne

• cell-catalog

  Cell catalog 2.0

  TypeScript · 0 Sterne

• idea-board

  TypeScript · 0 Sterne