AlexsLemonade / AlexsLemonade/training-modules
DESeqDatasetFromMatrix() doesn’t like tibbles?
- Dominant language
- HTML
- Stars
- 77
- Forks
- 35
- Avg merge
- 18h 38m
- Merged PRs (30d)
- 3
Description
There were 3 or 4 participants who encountered this problem at March 2021 workshops.
They had a tibble and tried to turn it into a DESeqDataSet. The error returned is something about row.names() but an as.data.frame() solves the problem. Idk that this requires a change in instruction but it was a common problem so I figured we should have it written down.
Contributor guide
Research direction
Search the workshop modules for the instructions covering DESeqDataSetFromMatrix(), then reproduce the reported error with a tibble and compare it with the as.data.frame() workaround. Done means documenting the tibble-related row.names() problem and the conversion needed to create a DESeqDataSet.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- documentation
- Issue type
- Documentation
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100