AlexsLemonade / AlexsLemonade/scRNA-seq_sandbox
Look into doublet finder algorithms
- Dominant language
- R
- Stars
- 1
- Forks
- 0
- PR merge metrics
- No merged PRs in 30d
Description
At GLBIO, found out about [scds](https://github.com/ kostkalab/scds).
How much does Alevin processing take care of doublets for us? But for non-Alevin processed data, do we need to do this (eg non-Tag based stuff)?
Contributor guide
No contributing guide indexed for this repository
Research direction
Start by reviewing the linked scds project and the issue’s question about how Alevin processing handles doublets. Compare that with the stated case of non-Alevin, non-Tag-based data; the issue does not identify repository files or tests. Done means determining whether additional doublet detection is needed for those data and documenting a clear next step.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100