AlexsLemonade / AlexsLemonade/sc-data-integration
Identify a CNV inference method to use for annotating tumor and normal cells
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Description
If we can't do a great job with cell types, what can we do with assigning tumor/normal status?
Especially inferring CNV status.
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Research direction
The issue names no files, tests, or entry points. First survey candidate CNV inference methods for assigning tumor/normal status in single-cell data, then define which method and annotation outcome would satisfy the issue.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100