AlexsLemonade / AlexsLemonade/sc-data-integration
Bump Seurat to 4.2
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Description
There appears to be a bug (or some kind of inconsistency?) in v4.1 related to `FindMarkers()` - https://github.com/satijalab/seurat/issues/6586#issuecomment-1304375264
We may want to bump up the version when 4.2 is released.
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Research direction
The issue identifies Seurat and the upstream FindMarkers inconsistency, but names no dependency file or test. Locate where the Seurat version is pinned, update it when version 4.2 is available, and verify FindMarkers behavior against the linked upstream report.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- data
- Issue type
- Bug
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 32/100