AlexsLemonade / AlexsLemonade/refinebio-examples

Advanced Topics: Batch correction example

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Description

Would be good to show examples of how to correct for batch effect. For this example, we would use refinebio data that is aggregated by species. Presumably include some sort of initial litmus test of sorts that if followed, would help identify whether batch correction is needed in the first place.

Contributor guide

Open the contributing guide

Research direction

No file, test, or entry point is named. Start by reviewing the repository's existing example workflows and define the refine.bio species-aggregated batch-correction example, including the proposed initial litmus test; done means the example and guidance clearly show when and how batch correction is needed.

Written by the indexing model from the issue text.

Assessment

Domain
data, documentation
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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