AlexsLemonade / AlexsLemonade/mbSSP

Use newest models in package

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Epic
Dominant language
R
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0
Forks
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No merged PRs in 30d

Description

Over in https://github.com/AlexsLemonade/medulloblastoma-classifier/, we trained new kTSP and RF models using a more up-to-date version of R/Bioconductor. This Epic tracks updating the package to use them.

(Edited by @sjspielman) Noting these planned tasks:

- [ ] Cut repo release in itscurrent state (`0.1.0`)
- [ ] Update models with new models and docs as needed
- [ ] Cut new release with new models (`0.2.0`)

Contributor guide

Open the contributing guide

Research direction

Begin by reviewing the current package state and the linked medulloblastoma-classifier repository, focusing on the newer kTSP and RF models. Done means releasing the current state as 0.1.0, updating the package and documentation to use the new models, and cutting a 0.2.0 release.

Written by the indexing model from the issue text.

Assessment

Tech stack
r
Domain
machine-learning, release
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Quiet
Clarity
Needs clarification
Newbie friendliness
35/100

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