AlexsLemonade / AlexsLemonade/OpenScPCA-nf
Add file type selection function
- Dominant language
- R
- Stars
- 2
- Forks
- 0
- PR merge metrics
- No merged PRs in 30d
Description
In #10 I implemented some steps to convert a channel of project directories to a channel where the processed rds files are represented as a list in the following form:
`[project_id, sample_id, [processed_rds1, processed_rds2, ...]]`
I expect that this type of function will be generally useful, so it would be nice to have a single function to repeat that performs that transformation. This function would have options for SCE/`rds` files or Anndata/`hdf5` files. We might also have an option to get other files from a project, such as the metadata or bulk data.
Contributor guide
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Research direction
Start by reviewing the transformation implemented in issue #10, which produces [project_id, sample_id, [processed files]] from project directories. Define what file types and optional metadata or bulk-data selections the function must support, then verify that the resulting project records match the stated form.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- data
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100