AlexsLemonade / AlexsLemonade/OpenScPCA-analysis
Explore cells that are classified as both immune and tumor in Ewing samples
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Description
### If you are filing this issue based on a specific GitHub Discussion, please link to the relevant Discussion.
#696
### Describe the goals of the changes to the analysis module.
In https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1084, it was noted that there are a small handful of cells across 3 samples that are classified as either macrophage or T cell by the consensus cell types and as tumor cells using expression of marker genes. We might consider taking a closer look at these cells and see why they are being classified as both.
### What will your pull request contain?
An exploratory notebook that looks at the expression of normal markers (either macrophage or T cell) in compared to tumor marker gene expression. This should help us identify which label is more appropriate.
### Will you require additional software beyond what is already in the analysis module?
No
### Will you require different computational resources beyond what the analysis module already uses?
No
### If known, when do you expect to file the pull request?
_No response_
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