Multiple loops for different modes

Hi Cigar Developers,

My issue:
Regarding the debugging in different modes, I have such questions.
In the Cigar project, it seems that in both analysis.py and cigar.py, there are both loops for modes.
In analysis.py, line 46, and cigar.py, line 32, there are two loops that exist for fixing.
Is it possible that you could help me clarify the purpose of setting up multiple loops here? Thank you.

Links to the file:
[analysis.py](https://github.com/ASSERT-KTH/cigar/blob/main/src/analysis.py)
[cigar.py](https://github.com/ASSERT-KTH/cigar/blob/main/src/cigar.py)

Many thanks.

Read src/analysis.py around line 46 and src/cigar.py around line 32, then compare how each loop relates to the project’s different modes. Confirm the intended purpose of both loops with the surrounding code and project context; done means providing a clear explanation of why both loops exist, or identifying a specific documentation change if clarification is needed.

Written by the indexing model from the issue text.