[Error] incorrect ownership for directories copied from /etc/skel

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**Describe the bug**
When you have a file instead of subdirectory of skel, eg /etc/skel/.config/foobar, the file itself (foobar) gets copied with correct ownership (1000:1000), but its parent folder (.config) is owned by root, meaning that other program's can't write to it.

**To Reproduce**
Use any image which includes files in subdirectories of /etc/skel

**Expected behavior**
The directory is owned by 1000:1000

**Logs**
Run the commands with `--verbose` and post the log here as a file upload
Attach also the output of `podman logs` or `docker logs`, possibly with `--latest` flag

**Desktop (please complete the following information):**
- Are you using podman, docker or lilipod? podman
- Which version or podman, docker or lilipod? 5.2.3
- Which version of distrobox? 1.18.0.1
- Which host distribution? Bluefin (Fedora Silverblue)
- How did you install distrobox? Bluefin provided

**Additional context**
Seems that this issue occured earlier https://github.com/89luca89/distrobox/issues/1144 and got fixed, then got another implementation after https://github.com/89luca89/distrobox/issues/1317 and the same issue shows up again.
[distrobox.log](https://github.com/user-attachments/files/17702356/distrobox.log)